Molecola del Mese
di David S. Goodsell
Trad. di Mauro Tonellato
Dimeri di Timina
Indice 2007

PianetaChimica

Structure ID  Title Authors Publication Year Journal Name Volume ID First Page Pubmed
2JA5 Cpd Damage Recognition by Transcribing RNA Polymerase II Brueckner, F., Hennecke, U., Carell, T., Cramer, P. 2007 Science 315 859 n/a
2JA6 Cpd Damage Recognition by Transcribing RNA Polymerase II Brueckner, F., Hennecke, U., Carell, T., Cramer, P. 2007 Science 315 859 n/a
2JA7 Cpd Damage Recognition by Transcribing RNA Polymerase II Brueckner, F., Hennecke, U., Carell, T., Cramer, P. 2007 Science 315 859 n/a
2JA8 Cpd Damage Recognition by Transcribing RNA Polymerase II Brueckner, F., Hennecke, U., Carell, T., Cramer, P. 2007 Science 315 859 n/a
1N4E Crystal Structure of a DNA Decamer Containing a cis-syn Thymine-dimer Park, H., Zhang, K., Ren, Y., Nadji, S., Sinha, N., Taylor, J.-S., Kang, C. 2002 Proc.Natl.Acad.Sci.USA 99 15965 12594204
1T4I Crystal Structure of a DNA Decamer Containing a cis-syn Thymine-dimer Park, H., Zhang, K., Ren, Y., Nadji, S., Sinha, N., Taylor, J.S., Kang, C. 2002 Proc.Natl.Acad.Sci.USA 99 15965 12456887
1SM5 Crystal Structure of a DNA Decamer Containing a Thymine-dimer Park, H., Zhang, K., Ren, Y., Nadji, S., Sinha, N., Taylor, J.-S., Kang, C. 2002 Proc.Natl.Acad.Sci.USA 99 15965 12456887
1IQU Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism. Komori, H., Masui, R., Kuramitsu, S., Yokoyama, S., Shibata, T., Inoue, Y., Miki, K. 2001 Proc.Natl.Acad.Sci.USA 98 13560 11707580
2BQ3 DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. Zang, H., Goodenough, A.K., Choi, J.Y., Irimia, A., Loukachevitch, L.V., Kozekov, I.D., Angel, K.C., Rizzo, C.J., Egli, M., Guengerich, F.P. 2005 J.Biol.Chem. 280 29750 n/a
2BQR DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. Zang, H., Goodenough, A.K., Choi, J.Y., Irimia, A., Loukachevitch, L.V., Kozekov, I.D., Angel, K.C., Rizzo, C.J., Egli, M., Guengerich, F.P. 2005 J.Biol.Chem. 280 29750 n/a
2BQU DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. Zang, H., Goodenough, A.K., Choi, J.Y., Irimia, A., Loukachevitch, L.V., Kozekov, I.D., Angel, K.C., Rizzo, C.J., Egli, M., Guengerich, F.P. 2005 J.Biol.Chem. 280 29750 n/a
2BR0 DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. Zang, H., Goodenough, A.K., Choi, J.Y., Irimia, A., Loukachevitch, L.V., Kozekov, I.D., Angel, K.C., Rizzo, C.J., Egli, M., Guengerich, F.P. 2005 J.Biol.Chem. 280 29750 n/a
2C22 Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., Guengerich, F.P. 2006 J.Biol.Chem. 281 2358 n/a
2C28 Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., P Guengerich, F. n/a To be Published n/a n/a n/a
2C2D Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., P Guengerich, F. n/a To be Published n/a n/a n/a
2C2E Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., P Guengerich, F. n/a To be Published n/a n/a n/a
2C2R Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., Guengerich, F.P. 2006 J.Biol.Chem. 281 2358 n/a
2UVR Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4 Eoff, R.L., Irimia, A., Angel, K.C., Egli, M., Guengerich, F.P. n/a To be Published n/a n/a n/a
2UVU Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4 Eoff, R.L., Irimia, A., Angel, K.C., Egli, M., Guengerich, F.P. n/a To be Published n/a n/a n/a
2UVV Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4 Eoff, R.L., Irimia, A., Angel, K.C., Egli, M., Guengerich, F.P. n/a To be Published n/a n/a n/a
2UVW Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4 Eoff, R.L., Irimia, A., Angel, K.C., Egli, M., Guengerich, F.P. n/a To be Published n/a n/a n/a
2JEF Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing. Eoff, R.L., Angel, K.C., Egli, M., Guengerich, F.P. 2007 J.Biol.Chem. 282 13573 n/a
2JEG Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing. Eoff, R.L., Angel, K.C., Egli, M., Guengerich, F.P. 2007 J.Biol.Chem. 282 13573 n/a
2JEI Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing. Eoff, R.L., Angel, K.C., Egli, M., Guengerich, F.P. 2007 J.Biol.Chem. 282 13573 n/a
2JEJ Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing. Eoff, R.L., Angel, K.C., Egli, M., Guengerich, F.P. 2007 J.Biol.Chem. 282 13573 n/a
2J07 Natural and Non-Natural Antenna Chromophores in the DNA Photolyase from Thermus Thermophilus Klar, T., Kaiser, G., Hennecke, U., Carell, T., Batschauer, A., Essen, L.-O. 2006 Chembiochem 7 1798 n/a
2J08 Natural and Non-Natural Antenna Chromophores in the DNA Photolyase from Thermus Thermophilus Klar, T., Kaiser, G., Hennecke, U., Carell, T., Batschauer, A., Essen, L.-O. 2006 Chembiochem 7 1798 n/a
2J09 Natural and Non-Natural Antenna Chromophores in the DNA Photolyase from Thermus Thermophilus Klar, T., Kaiser, G., Hennecke, U., Carell, T., Batschauer, A., Essen, L.-O. 2006 Chembiochem 7 1798 n/a
1SKR Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T. 2004 Nat.Struct.Mol.Biol. 11 784 15235589
1SKS Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T. 2004 Nat.Struct.Mol.Biol. 11 784 15235589
1SKW Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T. 2004 Nat.Struct.Mol.Biol. 11 784 15235589
1SL0 Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T. 2004 Nat.Struct.Mol.Biol. 11 784 15235589
1SL1 Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T. 2004 Nat.Struct.Mol.Biol. 11 784 15235589
1SL2 Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T. 2004 Nat.Struct.Mol.Biol. 11 784 15235589
1RYR Replication of a Cis-Syn Thymine Dimer at Atomic Resolution Ling, H., Boudsocq, F., Plosky, B., Woodgate, R., Yang, W. 2003 Nature 424 1083 12904819
1RYS Replication of a Cis-Syn Thymine Dimer at Atomic Resolution Ling, H., Boudsocq, F., Plosky, B., Woodgate, R., Yang, W. 2003 Nature 424 1083 12904819
1QL5 Solution Structure of a DNA Decamer Duplex Containing the 3' T.T Base Pair of the Cis-Syn Cyclobutane Pyrimidine Dimer: Implication for the Mutagenic Property of the Cis-Syn Dimer. Lee, J.-H., -J Choi, Y., Choi, B.-S. 2000 Nucleic Acids Res. 28 1794 10734199
1COC Solution-state structure of a DNA dodecamer duplex containing a Cis-syn thymine cyclobutane dimer, the major UV photoproduct of DNA. McAteer, K., Jing, Y., Kao, J., Taylor, J.S., Kennedy, M.A. 1998 J.Mol.Biol. 282 1013 9753551
1TTD Solution-state structure of a DNA dodecamer duplex containing a Cis-syn thymine cyclobutane dimer, the major UV photoproduct of DNA. McAteer, K., Jing, Y., Kao, J., Taylor, J.S., Kennedy, M.A. 1998 J.Mol.Biol. 282 1013 9753551
2BTO Structure of Bacterial Tubulin Btuba/B: Evidence for Horizontal Gene Transfer. Schlieper, D., Oliva, M.A., Andreu, J.M., Lowe, J. 2005 Proc.Natl.Acad.Sci.USA 102 9170 n/a
2J6S Sulfolobus Solfataricus DNA Polymerase Dpo4 is Partially Inhibited by "Wobble" Pairing between O6-Methylguanine and Cytosine, But Accurate Bypass is Preferred. Eoff, R.L., Irimia, A., Egli, M., Guengerich, F.P. 2007 J.Biol.Chem. 282 1456 n/a
2J6T Sulfolobus Solfataricus DNA Polymerase Dpo4 is Partially Inhibited by "Wobble" Pairing between O6-Methylguanine and Cytosine, But Accurate Bypass is Preferred. Eoff, R.L., Irimia, A., Egli, M., Guengerich, F.P. 2007 J.Biol.Chem. 282 1456 n/a
2J6U Sulfolobus Solfataricus DNA Polymerase Dpo4 is Partially Inhibited by "Wobble" Pairing between O6-Methylguanine and Cytosine, But Accurate Bypass is Preferred. Eoff, R.L., Irimia, A., Egli, M., Guengerich, F.P. 2007 J.Biol.Chem. 282 1456 n/a
1TPT Three-dimensional structure of thymidine phosphorylase from Escherichia coli at 2.8 A resolution. Walter, M.R., Cook, W.J., Cole, L.B., Short, S.A., Koszalka, G.W., Krenitsky, T.A., Ealick, S.E. 1990 J.Biol.Chem. 265 14016 2199449

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