Molecola del Mese
di David S. Goodsell
Trad. di Mauro Tonellato
Alfa-amilasi

Indice 2006


Structure ID    Authors First Page Journal Name Title Volume ID Publication Year Pubmed
1AMY Kadziola, A., Abe, J., Svensson, B., Haser,
R. 		104 J.Mol.Biol. Crystal and molecular structure of barley
alpha-amylase. 		239 1994 8196040
1AQH Aghajari, N., Feller, G., Gerday, C., Haser,
R. 		564 Protein Sci. Crystal structures of the psychrophilic alpha-amylase
from Alteromonas haloplanctis in its native
form and complexed with an inhibitor. 		7 1998 9541387
1AQM Aghajari, N., Feller, G., Gerday, C., Haser,
R. 		564 Protein Sci. Crystal structures of the psychrophilic alpha-amylase
from Alteromonas haloplanctis in its native
form and complexed with an inhibitor. 		7 1998 9541387
1AVA Vallee, F., Kadziola, A., Bourne, Y., Juy,
M., Rodenburg, K.W., Svensson, B., Haser,
R. 		649 Structure Barley alpha-amylase bound to its endogenous
protein inhibitor BASI: crystal structure
of the complex at 1.9 A resolution. 		6 1998 9634702
1B0I Aghajari, N., Feller, G., Gerday, C., Haser,
R. 		1503 Structure Structures of the psychrophilic Alteromonas
haloplanctis alpha-amylase give insights
into cold adaptation at a molecular level. 		6 1998 9862804
1B1U Gourinath, S., Srinivasan, A., Singh, T.P. 287 Acta Crystallogr., Sect.D Structure of the Bifunctional Inhibitor of
Trypsin and Alpha-Amylase from Ragi Seeds
at 2.2 Angstrom Resolution 		55 2000 10713515
1B2Y Qian, M., Haser, R., Buisson, G., Duee, E.,
Payan, F. 		6284 Biochemistry The active center of a mammalian alpha-amylase.
Structure of the complex of a pancreatic
alpha-amylase with a carbohydrate inhibitor
refined to 2.2-A resolution. 		33 1994 8193143
1BAG Fujimoto, Z., Takase, K., Doui, N., Momma,
M., Matsumoto, T., Mizuno, H. 		393 J.Mol.Biol. Crystal structure of a catalytic-site mutant
alpha-amylase from Bacillus subtilis complexed
with maltopentaose. 		277 1998 9514750
1BEA Behnke, C.A., Yee, V.C., Le Trong, I., Pedersen,
L.C., Stenkamp, R.E., Kim, S.-S., Reeck,
G.R., Teller, D.C. 		n/a To be Published X-Ray Crystallographic Structure Determination
at 1.9 A Resolution of the 14 kDa Bifunctional
Protease and Amylase Inhibitor from Corn 		n/a n/a n/a
1BFA Behnke, C.A., Yee, V.C., Trong, I.L., Pedersen,
L.C., Stenkamp, R.E., Kim, S.S., Reeck,
G.R., Teller, D.C. 		15277 Biochemistry Structural determinants of the bifunctional
corn Hageman factor inhibitor: x-ray crystal
structure at 1.95 A resolution. 		37 1998 9799488
1BFN Adachi, M., Mikami, B., Katsube, T., Utsumi,
S. 		19859 J.Biol.Chem. Crystal structure of recombinant soybean
beta-amylase complexed with beta-cyclodextrin. 		273 1998 9677422
1BG9 Kadziola, A., Sogaard, M., Svensson, B.,
Haser, R. 		205 J.Mol.Biol. Molecular structure of a barley alpha-amylase-inhibitor
complex: implications for starch binding
and catalysis. 		278 1998 9571044
1BIP Strobl, S., Muhlhahn, P., Bernstein, R.,
Wiltscheck, R., Maskos, K., Wunderlich,
M., Huber, R., Glockshuber, R., Holak, T.A. 		8281 Biochemistry Determination of the three-dimensional structure
of the bifunctional alpha-amylase/trypsin
inhibitor from ragi seeds by NMR spectroscopy. 		34 1995 7599120
1BLI Machius, M., Declerck, N., Huber, R., Wiegand,
G. 		281 Structure Activation of Bacillus licheniformis alpha-amylase
through a disorder-->order transition of
the substrate-binding site mediated by a
calcium-sodium-calcium metal triad. 		6 1998 9551551
1BPL Machius, M., Wiegand, G., Huber, R. 545 J.Mol.Biol. Crystal structure of calcium-depleted Bacillus
licheniformis alpha-amylase at 2.2 A resolution. 		246 1995 7877175
1BSI Rydberg, E.H., Sidhu, G., Vo, H.C., Hewitt,
J., Cote, H.C., Wang, Y., Numao, S., MacGillivray,
R.T., Overall, C.M., Brayer, G.D., Withers,
S.G. 		635 Protein Sci. Cloning, mutagenesis, and structural analysis
of human pancreatic alpha-amylase expressed
in Pichia pastoris. 		8 1999 10091666
1BTC Mikami, B., Sato, M., Shibata, T., Hirose,
M., Aibara, S., Katsube, Y., Morita, Y. 		541 J.Biochem.(Tokyo) Three-dimensional structure of soybean beta-amylase
determined at 3.0 A resolution: preliminary
chain tracing of the complex with alpha-cyclodextrin. 		112 1992 1491009
1BVN Wiegand, G., Epp, O., Huber, R. 99 J.Mol.Biol. The crystal structure of porcine pancreatic
alpha-amylase in complex with the microbial
inhibitor Tendamistat. 		247 1995 7897663
1BVZ Kamitori, S., Kondo, S., Okuyama, K., Yokota,
T., Shimura, Y., Tonozuka, T., Sakano, Y. 		907 J.Mol.Biol. Crystal structure of Thermoactinomyces vulgaris
R-47 alpha-amylase II (TVAII) hydrolyzing
cyclodextrins and pullulan at 2.6 A resolution. 		287 1999 10222200
1BYA Mikami, B., Degano, M., Hehre, E.J., Sacchettini,
J.C. 		7779 Biochemistry Crystal structures of soybean beta-amylase
reacted with beta-maltose and maltal: active
site components and their apparent roles
in catalysis. 		33 1994 8011643
1BYB Mikami, B., Degano, M., Hehre, E.J., Sacchettini,
J.C. 		7779 Biochemistry Crystal structures of soybean beta-amylase
reacted with beta-maltose and maltal: active
site components and their apparent roles
in catalysis. 		33 1994 8011643
1BYC Mikami, B., Degano, M., Hehre, E.J., Sacchettini,
J.C. 		7779 Biochemistry Crystal structures of soybean beta-amylase
reacted with beta-maltose and maltal: active
site components and their apparent roles
in catalysis. 		33 1994 8011643
1BYD Mikami, B., Degano, M., Hehre, E.J., Sacchettini,
J.C. 		7779 Biochemistry Crystal structures of soybean beta-amylase
reacted with beta-maltose and maltal: active
site components and their apparent roles
in catalysis. 		33 1994 8011643
1C8Q Ramasubbu, N., Sekar, K., Velmurugan, D. n/a To be Published Structure solution and refinment of recombinant
human salivary amylase 		n/a n/a n/a
1CLV Pereira, P.J., Lozanov, V., Patthy, A., Huber,
R., Bode, W., Pongor, S., Strobl, S. 		1079 Structure Fold.Des. Specific inhibition of insect alpha-amylases:
yellow meal worm alpha-amylase in complex
with the amaranth alpha-amylase inhibitor
at 2.0 A resolution. 		7 1999 10508777
1CPU Brayer, G.D., Sidhu, G., Maurus, R., Rydberg,
E.H., Braun, C., Wang, Y., Nguyen, N.T.,
Overall, C.M., Withers, S.G. 		4778 Biochemistry Subsite mapping of the human pancreatic alpha-amylase
active site through structural, kinetic,
and mutagenesis techniques. 		39 2000 10769135
1CXK Uitdehaag, J.C., Mosi, R., Kalk, K.H., van
der Veen, B.A., Dijkhuizen, L., Withers,
S.G., Dijkstra, B.W. 		432 Nat.Struct.Biol. X-ray structures along the reaction pathway
of cyclodextrin glycosyltransferase elucidate
catalysis in the alpha-amylase family. 		6 1999 10331869
1CXL Uitdehaag, J.C., Mosi, R., Kalk, K.H., van
der Veen, B.A., Dijkhuizen, L., Withers,
S.G., Dijkstra, B.W. 		432 Nat.Struct.Biol. X-ray structures along the reaction pathway
of cyclodextrin glycosyltransferase elucidate
catalysis in the alpha-amylase family. 		6 1999 10331869
1D3C Uitdehaag, J.C., Kalk, K.H., van Der Veen,
B.A., Dijkhuizen, L., Dijkstra, B.W. 		34868 J.Biol.Chem. The cyclization mechanism of cyclodextrin
glycosyltransferase (CGTase) as revealed
by a gamma-cyclodextrin-CGTase complex at
1.8-A resolution. 		274 1999 10574960
1DHK Bompard-Gilles, C., Rousseau, P., Rouge,
P., Payan, F. 		1441 Structure Substrate mimicry in the active center of
a mammalian alpha-amylase: structural analysis
of an enzyme-inhibitor complex. 		4 1996 8994970
1DTU van der Veen, B.A., Uitdehaag, J.C., Penninga,
D., van Alebeek, G.J., Smith, L.M., Dijkstra,
B.W., Dijkhuizen, L. 		1027 J.Mol.Biol. Rational design of cyclodextrin glycosyltransferase
from Bacillus circulans strain 251 to increase
alpha-cyclodextrin production. 		296 2000 10686101
1E3X Brzozowski, A.M., Lawson, D.M., Turkenburg,
J.P., Bisgaard-Frantzen, H., Svendsen, A.,
Borchert, T.V., Dauter, Z., Wilson, K.S.,
Davies, G.J. 		9099 Biochemistry Structural analysis of a chimeric bacterial
alpha-amylase. High-resolution analysis
of native and ligand complexes. 		39 2000 10924103
1E3Z Brzozowski, A.M., Lawson, D.M., Turkenburg,
J.P., Bisgaard-Frantzen, H., Svendsen, A.,
Borchert, T.V., Dauter, Z., Wilson, K.S.,
Davies, G.J. 		9099 Biochemistry Structural analysis of a chimeric bacterial
alpha-amylase. High-resolution analysis
of native and ligand complexes. 		39 2000 10924103
1E40 Brzozowski, A.M., Lawson, D.M., Turkenburg,
J.P., Bisgaard-Frantzen, H., Svendsen, A.,
Borchert, T.V., Dauter, Z., Wilson, K.S.,
Davies, G.J. 		9099 Biochemistry Structural analysis of a chimeric bacterial
alpha-amylase. High-resolution analysis
of native and ligand complexes. 		39 2000 10924103
1E43 Brzozowski, A.M., Lawson, D.M., Turkenburg,
J.P., Bisgaard-Frantzen, H., Svendsen, A.,
Borchert, T.V., Dauter, Z., Wilson, K.S.,
Davies, G.J. 		9099 Biochemistry Structural analysis of a chimeric bacterial
alpha-amylase. High-resolution analysis
of native and ligand complexes. 		39 2000 10924103
1EO5 Uitdehaag, J.C., van Alebeek, G.J., van Der
Veen, B.A., Dijkhuizen, L., Dijkstra, B.W. 		7772 Biochemistry Structures of maltohexaose and maltoheptaose
bound at the donor sites of cyclodextrin
glycosyltransferase give insight into the
mechanisms of transglycosylation activity
and cyclodextrin size specificity. 		39 2000 10869182
1EO7 Uitdehaag, J.C., van Alebeek, G.J., van Der
Veen, B.A., Dijkhuizen, L., Dijkstra, B.W. 		7772 Biochemistry Structures of maltohexaose and maltoheptaose
bound at the donor sites of cyclodextrin
glycosyltransferase give insight into the
mechanisms of transglycosylation activity
and cyclodextrin size specificity. 		39 2000 10869182
1ESW Przylas, I., Terada, Y., Fujii, K., Takaha,
T., Saenger, W., Strater, N. 		6903 Eur.J.Biochem. X-ray structure of acarbose bound to amylomaltase
from Thermus aquaticus. Implications for
the synthesis of large cyclic glucans. 		267 2000 11082203
1FP8 Uitdehaag, J.C.M., Euverink, G.J., van der
Veen, B.A., van der Maarel, M., Dijkstra,
B.W. 		n/a To be Published Structure and mechanism of the amylomaltase
from Thermus thermophilus HB8 		n/a n/a n/a
1FP9 Uitdehaag, J.C.M., Euverink, G.J., van der
Veen, B.A., van der Maarel, M., Dijkstra,
B.W. 		n/a To be Published Structure of the amylomaltase from Thermus
thermophilus HB8 in space group C2 		n/a n/a n/a
1G1Y Kondo, S., Ohtaki, A., Tonozuka, T., Sakano,
Y., Kamitori, S. 		423 J.Biochem.(Tokyo) Studies on the hydrolyzing mechanism for
cyclodextrins of Thermoactinomyces vulgaris
R-47 alpha-amylase 2 (TVAII). X-ray structure
of the mutant E354A complexed with beta-cyclodextrin,
and kinetic analyses on cyclodextrins. 		129 2001 11226882
1G5A Skov, L.K., Mirza, O., Henriksen, A., De
Montalk, G.P., Remaud-Simeon, M., Sarcabal,
P., Willemot, R.M., Monsan, P., Gajhede,
M. 		25273 J.Biol.Chem. Amylosucrase, A Glucan-synthesizing Enzyme
from the alpha-Amylase Family 		276 2001 11306569
1G94 Aghajari, N., Roth, M., Haser, R. 4273 Biochemistry Crystallographic evidence of a transglycosylation
reaction: ternary complexes of a psychrophilic
alpha-amylase. 		41 2002 11914073
1G9H AGHAJARI, N., ROTH, M., HASER, R. 4273 Biochemistry Crystallographic evidence of a transglycosylation
reaction: ternary complexes of a psychrophilic
alpha-amylase. 		41 2002 11914073
1GJU Roujeinikova, A., Raasch, C., Burke, J.,
Baker, P.J., Liebl, W., Rice, D.W. 		119 J.Mol.Biol. The crystal structure of Thermotoga maritima
maltosyltransferase and its implications
for the molecular basis of the novel transfer
specificity. 		312 2001 11545590
1GJW Roujeinikova, A., Raasch, C., Burke, J.,
Baker, P.J., Liebl, W., Rice, D.W. 		119 J.Mol.Biol. The crystal structure of Thermotoga maritima
maltosyltransferase and its implications
for the molecular basis of the novel transfer
specificity. 		312 2001 11545590
1HNY Brayer, G.D., Luo, Y., Withers, S.G. 1730 Protein Sci. The structure of human pancreatic alpha-amylase
at 1.8 A resolution and comparisons with
related enzymes. 		4 1995 8528071
1HOE Pflugrath, J.W., Wiegand, G., Huber, R.,
Vertesy, L. 		383 J.Mol.Biol. Crystal structure determination, refinement
and the molecular model of the alpha-amylase
inhibitor Hoe-467A. 		189 1986 3489104
1HSS Oda, Y., Matsunaga, T., Fukuyama, K., Miyazaki,
T., Morimoto, T. 		13503 Biochemistry Tertiary and quaternary structures of 0.19
alpha-amylase inhibitor from wheat kernel
determined by X-ray analysis at 2.06 A resolution. 		36 1997 9354618
1HT6 Robert, X., Haser, R., Gottschalk, T.E.,
Ratajczak, F., Driguez, H., Svensson, B.,
Aghajari, N. 		973 Structure The structure of barley alpha-amylase isozyme
1 reveals a novel role of domain C in substrate
recognition and binding: a pair of sugar
tongs 		11 2003 12906828
1HTX Martins, J.C., Enassar, M., Willem, R., Wieruzeski,
J.M., Lippens, G., Wodak, S.J. 		2379 Eur.J.Biochem. Solution structure of the main alpha-amylase
inhibitor from amaranth seeds. 		268 2001 11298757
1HVX Suvd, D., Fujimoto, Z., Takase, K., Matsumura,
M., Mizuno, H. 		461 J.Biol.Chem. Crystal structure of Bacillus stearothermophilus
alpha-amylase: possible factors determining
the thermostability. 		129 2001 11226887
1HX0 Qian, M., Nahoum, V., Bonicel, J., Bischoff,
H., Henrissat, B., Payan, F. 		7700 Biochemistry Enzyme-catalyzed condensation reaction in
a mammalian alpha-amylase. High-resolution
structural analysis of an enzyme-inhibitor
complex. 		40 2001 11412124
1IZJ Ohtaki, A., Iguchi, A., Mizuno, M., Tonozuka,
T., Sakano, Y., Kamitori, S. 		1553 CARBOHYDR.RES. Mutual conversion of substrate specificities
of Thermoactinomyces vulgaris R-47 alpha-amylases
TVAI and TVAII by site-directed mutagenesis 		338 2003 12860426
1IZK Ohtaki, A., Iguchi, A., Mizuno, M., Tonozuka,
T., Sakano, Y., Kamitori, S. 		1553 CARBOHYDR.RES. Mutual conversion of substrate specificities
of Thermoactinomyces vulgaris R-47 alpha-amylases
TVAI and TVAII by site-directed mutagenesis 		338 2003 12860426
1J11 Oyama, T., Miyake, H., Kusunoki, M., Nitta,
Y. 		467 J.BIOCHEM.(TOKYO) Crystal Structures of beta-Amylase from Bacillus
cereus var. mycoides in Complexes with Substrate
Analogs and Affinity-Labeling Reagents 		133 2003 12761294
1J12 Oyama, T., Miyake, H., Kusunoki, M., Nitta,
Y. 		467 J.BIOCHEM.(TOKYO) Crystal Structures of beta-Amylase from Bacillus
cereus var. mycoides in Complexes with Substrate
Analogs and Affinity-Labeling Reagents 		133 2003 12761294
1JAE Strobl, S., Maskos, K., Betz, M., Wiegand,
G., Huber, R., Gomis-Ruth, F.X., Glockshuber,
R. 		617 J.Mol.Biol. Crystal structure of yellow meal worm alpha-amylase
at 1.64 A resolution. 		278 1998 9600843
1JD7 Aghajari, N., Feller, G., Gerday, C., Haser,
R. 		1435 PROTEIN SCI. Structural basis of alpha-amylase activation
by chloride 		11 2002 12021442
1JD9 Aghajari, N., Feller, G., Gerday, C., Haser,
R. 		1435 PROTEIN SCI. Structural basis of alpha-amylase activation
by chloride 		11 2002 12021442
1JF5 Ohtaki, A., Kondo, S., Shimura, Y., Tonozuka,
T., Sakano, Y., Kamitori, S. 		309 CARBOHYDR.RES. Role of Phe286 in the recognition mechanism
of cyclomaltooligosaccharides (cyclodextrins)
by Thermoactinomyces vulgaris R-47 alpha-amylase
2 (TVAII). X-ray structures of the mutant
TVAIIs, F286A and F286Y, and kinetic analyses
of the Phe286-replaced mutant TVAIIs 		334 2001 11527532
1JF6 Ohtaki, A., Kondo, S., Shimura, Y., Tonozuka,
T., Sakano, Y., Kamitori, S. 		309 CARBOHYDR.RES. Role of Phe286 in the recognition mechanism
of cyclomaltooligosaccharides (cyclodextrins)
by Thermoactinomyces vulgaris R-47 alpha-amylase
2 (TVAII). X-ray structures of the mutant
TVAIIs, F286A and F286Y, and kinetic analyses
of the Phe286-replaced mutant TVAIIs 		334 2001 11527532
1JFH Qian, M., Spinelli, S., Driguez, H., Payan,
F. 		2285 Protein Sci. Structure of a pancreatic alpha-amylase bound
to a substrate analogue at 2.03 A resolution. 		6 1997 9385631
1JI1 Kamitori, S., Abe, A., Ohtaki, A., Kaji,
A., Tonozuka, T., Sakano, Y. 		443 J.Mol.Biol. Crystal structures and structural comparison
of Thermoactinomyces vulgaris R-47 alpha-amylase
1 (TVAI) at 1.6 A resolution and alpha-amylase
2 (TVAII) at 2.3 A resolution. 		318 2002 12051850
1JI2 Kamitori, S., Abe, A., Ohtaki, A., Kaji,
A., Tonozuka, T., Sakano, Y. 		443 J.Mol.Biol. Crystal structures and structural comparison
of Thermoactinomyces vulgaris R-47 alpha-amylase
1 (TVAI) at 1.6 A resolution and alpha-amylase
2 (TVAII) at 2.3 A resolution. 		318 2002 12051850
1JIB Yokota, T., Tonozuka, T., Shimura, Y., Ichikawa,
K., Kamitori, S., Sakano, Y. 		619 Biosci.Biotechnol.Biochem. Structures of Thermoactinomyces vulgaris
R-47 alpha-amylase II complexed with substrate
analogues. 		65 2001 11330677
1JL8 Yokota, T., Tonozuka, T., Shimura, Y., Ichikawa,
K., Kamitori, S., Sakano, Y. 		619 Biosci.Biotechnol.Biochem. Structures of Thermoactinomyces vulgaris
R-47 alpha-amylase II complexed with substrate
analogues. 		65 2001 11330677
1JXJ Ramasubbu, N., Ragunath, C., Mishra, P.J.,
Thomas, L.M., Kandra, L. 		2517 Eur.J.Biochem. Human salivary alpha-amylase Trp58 situated
at subsite -2 is critical for enzyme activity. 		271 2004 15182367
1JXK Ramasubbu, N., Ragunath, C., Mishra, P.J. 1061 J.Mol.Biol. Probing the role of a mobile loop in substrate
binding and enzyme activity of human salivary
amylase 		325 2003 12527308
1KB3 Numao, S., Maurus, R., Sidhu, G., Wang, Y.,
Overall, C.M., Brayer, G.D., Withers, S.G. 		215 Biochemistry Probing the role of the chloride ion in the
mechanism of human pancreatic alpha-amylase. 		41 2002 11772019
1KBB Rydberg, E.H., Li, C., Maurus, R., Overall,
C.M., Brayer, G.D., Withers, S.G. 		4492 Biochemistry Mechanistic analyses of catalysis in human
pancreatic alpha-amylase: detailed kinetic
and structural studies of mutants of three
conserved carboxylic acids. 		41 2002 11914097
1KBK Rydberg, E.H., Li, C., Maurus, R., Overall,
C.M., Brayer, G.D., Withers, S.G. 		4492 Biochemistry Mechanistic analyses of catalysis in human
pancreatic alpha-amylase: detailed kinetic
and structural studies of mutants of three
conserved carboxylic acids. 		41 2002 11914097
1KGU Numao, S., Maurus, R., Sidhu, G., Wang, Y.,
Overall, C.M., Brayer, G.D., Withers, S.G. 		215 Biochemistry Probing the role of the chloride ion in the
mechanism of human pancreatic alpha-amylase. 		41 2002 11772019
1KGW Numao, S., Maurus, R., Sidhu, G., Wang, Y.,
Overall, C.M., Brayer, G.D., Withers, S.G. 		215 Biochemistry Probing the role of the chloride ion in the
mechanism of human pancreatic alpha-amylase. 		41 2002 11772019
1KGX Numao, S., Maurus, R., Sidhu, G., Wang, Y.,
Overall, C.M., Brayer, G.D., Withers, S.G. 		215 Biochemistry Probing the role of the chloride ion in the
mechanism of human pancreatic alpha-amylase. 		41 2002 11772019
1KXH Aghajari, N., Roth, M., Haser, R. 4273 Biochemistry Crystallographic evidence of a transglycosylation
reaction: ternary complexes of a psychrophilic
alpha-amylase. 		41 n/a 11914073
1KXQ Desmyter, A., Spinelli, S., Payan, F., Lauwereys,
M., Wyns, L., Muyldermans, S., Cambillau,
C. 		23645 J.Biol.Chem. Three camelid VHH domains in complex with
porcine pancreatic alpha-amylase. Inhibition
and versatility of binding topology. 		277 2002 11960990
1KXT Desmyter, A., Spinelli, S., Payan, F., Lauwereys,
M., Wyns, L., Muyldermans, S., Cambillau,
C. 		23645 J.Biol.Chem. Three camelid VHH domains in complex with
porcine pancreatic alpha-amylase. Inhibition
and versatility of binding topology. 		277 2002 11960990
1KXV Desmyter, A., Spinelli, S., Payan, F., Lauwereys,
M., Wyns, L., Muyldermans, S., Cambillau,
C. 		23645 J.Biol.Chem. Three camelid VHH domains in complex with
porcine pancreatic alpha-amylase. Inhibition
and versatility of binding topology. 		277 2002 11960990
1L0P Aghajari, N., Feller, G., Gerday, C., Haser,
R. 		1435 Protein Sci. Structural basis of alpha-amylase activation
by chloride. 		11 2002 12021442
1LF6 Aleshin, A.E., Feng, P.-H., Honzatko, R.B.,
Reilly, P.J. 		61 J.Mol.Biol. Crystal structure and evolution of prokaryotic
glucoamylase 		327 2003 12614608
1LF9 Aleshin, A.E., Feng, P.-H., Honzatko, R.B.,
Reilly, P.J. 		61 J.Mol.Biol. Crystal structure and evolution of prokaryotic
glucoamylase 		327 2003 12614608
1LWH Roujeinikova, A., Raasch, C., Sedelnikova,
S., Liebl, W., Rice, D.W. 		149 J.Mol.Biol. CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA
4-ALPHA-GLUCANOTRANSFERASE AND ITS ACARBOSE
COMPLEX: IMPLICATIONS FOR SUBSTRATE SPECIFICITY
AND CATALYSIS 		321 2002 12139940
1LWJ Roujeinikova, A., Raasch, C., Sedelnikova,
S., Liebl, W., Rice, D.W. 		149 J.Mol.Biol. CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA
4-ALPHA-GLUCANOTRANSFERASE AND ITS ACARBOSE
COMPLEX: IMPLICATIONS FOR SUBSTRATE SPECIFICITY
AND CATALYSIS 		321 2002 12139940
1MFU Ramasubbu, N., Ragunath, C., Mishra, P.J. 1061 J.Mol.Biol. Probing the role of a mobile loop in substrate
binding and enzyme activity of human salivary
amylase. 		325 2003 12527308
1MFV Ramasubbu, N., Ragunath, C., Mishra, P.J. 1061 J.Mol.Biol. Probing the role of a mobile loop in substrate
binding and enzyme activity of human salivary
amylase. 		325 2003 12527308
1MVY Skov, L.K., Mirza, O., Sprogoe, D., Dar,
I., Remaud-Simeon, M., Albenne, C., Monsan,
P., Gajhede, M. 		47741 J.BIOL.CHEM. Oligosaccharide and Sucrose Complexes of
Amylosucrase. STRUCTURAL IMPLICATIONS FOR
THE POLYMERASE ACTIVITY 		277 2002 12364331
1MW0 Skov, L.K., Mirza, O., Sprogoe, D., Dar,
I., Remaud-Simeon, M., Albenne, C., Monsan,
P., Gajhede, M. 		47741 J.BIOL.CHEM. Oligosaccharide and Sucrose Complexes of
Amylosucrase. STRUCTURAL IMPLICATIONS FOR
THE POLYMERASE ACTIVITY 		277 2002 12364331
1MW1 Skov, L.K., Mirza, O., Sprogoe, D., Dar,
I., Remaud-Simeon, M., Albenne, C., Monsan,
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1MW2 Skov, L.K., Mirza, O., Sprogoe, D., Dar,
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1MW3 Skov, L.K., Mirza, O., Sprogoe, D., Dar,
I., Remaud-Simeon, M., Albenne, C., Monsan,
P., Gajhede, M. 		47741 J.BIOL.CHEM. Oligosaccharide and Sucrose Complexes of
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1MWO Linden, A., Mayans, O., Meyer-Klaucke, W.,
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1MXD Linden, A., Mayans, O., Meyer-Klaucke, W.,
Antranikian, G., Wilmanns, M. 		9875 J.Biol.Chem. Differential Regulation of a Hyperthermophilic
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1MXG Linden, A., Mayans, O., Meyer-Klaucke, W.,
Antranikian, G., Wilmanns, M. 		9875 J.Biol.Chem. Differential Regulation of a Hyperthermophilic
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1NM9 Ramasubbu, N., Ragunath, C., Mishra, P.J.,
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1OK0 Koenig, V., Vertesy, L., Schneider, T.R. 1737 Acta Crystallogr.,Sect.D Crystal Structure of the Alpha-Amylase Inhibitor
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1OSE Gilles, C., Astier, J.P., Marchis-Mouren,
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1OT2 Leemhuis, H., Rozeboom, H.J., Dijkstra, B.W.,
Dijkhuizen, L. 		47 Febs Lett. The fully conserved Asp residue in Conserved
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1P6W Robert, X., Haser, R., Gottschalk, T.E.,
Ratajczak, F., Driguez, H., Svensson, B.,
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1PIF Machius, M., Vertesy, L., Huber, R., Wiegand,
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1PIG Machius, M., Vertesy, L., Huber, R., Wiegand,
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1PPI Qian, M., Haser, R., Buisson, G., Duee, E.,
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1Q4N Ramasubbu, N., Sundar, K., Ragunath, C.,
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1Q6C Hirata, A., Adachi, M., Sekine, A., Kang,
Y.N., Utsumi, S., Mikami, B. 		7287 J.Biol.Chem. Structural and Enzymatic Analysis of Soybean
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1Q6D Hirata, A., Adachi, M., Sekine, A., Kang,
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1Q6E Hirata, A., Adachi, M., Sekine, A., Kang,
Y.N., Utsumi, S., Mikami, B. 		7287 J.Biol.Chem. Structural and Enzymatic Analysis of Soybean
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1Q6F Hirata, A., Adachi, M., Sekine, A., Kang,
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1Q6G Hirata, A., Adachi, M., Sekine, A., Kang,
Y.N., Utsumi, S., Mikami, B. 		7287 J.Biol.Chem. Structural and Enzymatic Analysis of Soybean
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1QFD Lu, S., Deng, P., Liu, X., Luo, J., Han,
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1QHO Dauter, Z., Dauter, M., Brzozowski, A.M.,
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"maltogenic" alpha-amylase from Bacillus
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1QHP Dauter, Z., Dauter, M., Brzozowski, A.M.,
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L., Wilson, K.S., Davies, G.J. 		8385 Biochemistry X-ray structure of Novamyl, the five-domain
"maltogenic" alpha-amylase from Bacillus
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1QI3 Hasegawa, K., Kubota, M., Matsuura, Y. 819 Protein Eng. Roles of catalytic residues in alpha-amylases
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1QI4 Hasegawa, K., Kubota, M., Matsuura, Y. 819 Protein Eng. Roles of catalytic residues in alpha-amylases
as evidenced by the structures of the product-complexed
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1QI5 Hasegawa, K., Kubota, M., Matsuura, Y. 819 Protein Eng. Roles of catalytic residues in alpha-amylases
as evidenced by the structures of the product-complexed
mutants of a maltotetraose-forming amylase. 		12 1999 10556241
1QJV Jenkins, J., Mayans, O., Smith, D., Worboys,
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1QPK Hasegawa, K., Kubota, M., Matsuura, Y. 819 Protein Eng. Roles of catalytic residues in alpha-amylases
as evidenced by the structures of the product-complexed
mutants of a maltotetraose-forming amylase. 		12 1999 10556241
1RP8 Robert, X., Haser, R., Mori, H., Svensson,
B., Aghajari, N. 		32968 J.Biol.Chem. Oligosaccharide Binding to Barley {alpha}-Amylase
1 		280 2005 16030022
1RP9 Robert, X., Haser, R., Mori, H., Svensson,
B., Aghajari, N. 		32968 J.Biol.Chem. Oligosaccharide Binding to Barley {alpha}-Amylase
1 		280 2005 16030022
1RPK Robert, X., Haser, R., Mori, H., Svensson,
B., Aghajari, N. 		32968 J.Biol.Chem. Oligosaccharide Binding to Barley {alpha}-Amylase
1 		280 2005 16030022
1S46 Jensen, M.H., Mirza, O., Albenne, C., Remaud-Simeon,
M., Monsan, P., Gajhede, M., Skov, L.K. 		3104 Biochemistry Crystal Structure of the Covalent Intermediate
of Amylosucrase from Neisseria polysaccharea 		43 2004 n/a
1SMD Ramasubbu, N., Paloth, V., Luo, Y.G., Brayer,
G.D., Levine, M.J. 		435 Acta Crystallogr D Biol Crystallogr Structure of human salivary alpha-amylase
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1TMQ Strobl, S., Maskos, K., Wiegand, G., Huber,
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1U2Y Numao, S., Damager, I., Li, C., Wrodnigg,
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Novel alpha-Amylase Inhibitors. 		279 2004 15304511
1U30 Numao, S., Damager, I., Li, C., Wrodnigg,
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Novel alpha-Amylase Inhibitors. 		279 2004 15304511
1U33 Numao, S., Damager, I., Li, C., Wrodnigg,
T.M., Begum, A., Overall, C.M., Brayer,
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1UA3 Payan, F., Qian, M. 275 J.PROTEIN CHEM. Crystal Structure of the Pig Pancreatic alpha-Amylase
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1UA7 Kagawa, M., Fujimoto, Z., Momma, M., Takase,
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1UD2 Nonaka, T., Fujihashi, M., Kita, A., Hagihara,
H., Ozaki, K., Ito, S., Miki, K. 		24818 J.Biol.Chem. Crystal structure of calcium-free alpha-amylase
from Bacillus sp. strain KSM-K38 (AmyK38)
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1UD3 Nonaka, T., Fujihashi, M., Kita, A., Hagihara,
H., Ozaki, K., Ito, S., Miki, K. 		24818 J.Biol.Chem. Crystal structure of calcium-free alpha-amylase
from Bacillus sp. strain KSM-K38 (AmyK38)
and its sodium ion binding sites 		278 2003 12719434
1UD4 Nonaka, T., Fujihashi, M., Kita, A., Hagihara,
H., Ozaki, K., Ito, S., Miki, K. 		24818 J.Biol.Chem. Crystal structure of calcium-free alpha-amylase
from Bacillus sp. strain KSM-K38 (AmyK38)
and its sodium ion binding sites 		278 2003 12719434
1UD5 Nonaka, T., Fujihashi, M., Kita, A., Hagihara,
H., Ozaki, K., Ito, S., Miki, K. 		24818 J.Biol.Chem. Crystal structure of calcium-free alpha-amylase
from Bacillus sp. strain KSM-K38 (AmyK38)
and its sodium ion binding sites 		278 2003 12719434
1UD6 Nonaka, T., Fujihashi, M., Kita, A., Hagihara,
H., Ozaki, K., Ito, S., Miki, K. 		24818 J.Biol.Chem. Crystal structure of calcium-free alpha-amylase
from Bacillus sp. strain KSM-K38 (AmyK38)
and its sodium ion binding sites 		278 2003 12719434
1UD8 Nonaka, T., Fujihashi, M., Kita, A., Hagihara,
H., Ozaki, K., Ito, S., Miki, K. 		24818 J.Biol.Chem. Crystal structure of calcium-free alpha-amylase
from Bacillus sp. strain KSM-K38 (AmyK38)
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1UH2 Abe, A., Tonozuka, T., Sakano, Y., Kamitori,
S. 		811 J.Mol.Biol. Complex Structures of Thermoactinomyces vulgaris
R-47 alpha-Amylase 1 with Malto-oligosaccharides
Demonstrate the Role of Domain N Acting
as a Starch-binding Domain 		335 2004 14687576
1UH3 Abe, A., Tonozuka, T., Sakano, Y., Kamitori,
S. 		811 J.Mol.Biol. Complex Structures of Thermoactinomyces vulgaris
R-47 alpha-Amylase 1 with Malto-oligosaccharides
Demonstrate the Role of Domain N Acting
as a Starch-binding Domain 		335 2004 14687576
1UH4 Abe, A., Tonozuka, T., Sakano, Y., Kamitori,
S. 		811 J.Mol.Biol. Complex Structures of Thermoactinomyces vulgaris
R-47 alpha-Amylase 1 with Malto-oligosaccharides
Demonstrate the Role of Domain N Acting
as a Starch-binding Domain 		335 2004 14687576
1VAH Zhuo, H., Payan, F., Qian, M. 379 Protein J Crystal structure of the pig pancreatic alpha-amylase
complexed with rho-nitrophenyl-alpha-D-maltoside-flexibility
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1VB9 Mizuno, M., Tonozuka, T., Uechi, A., Ohtaki,
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vulgaris R-47 alpha-amylase II (TVA II)
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1VFK Ohtaki, A., Mizuno, M., Tonozuka, T., Sakano,
Y., Kamitori, S. 		31033 J.BIOL.CHEM. Complex structures of Thermoactinomyces vulgaris
R-47 alpha-amylase 2 with acarbose and cyclodextrins
demonstrate the multiple substrate recognition
mechanism 		279 2004 15138257
1VFM Ohtaki, A., Mizuno, M., Tonozuka, T., Sakano,
Y., Kamitori, S. 		31033 J.BIOL.CHEM. Complex structures of Thermoactinomyces vulgaris
R-47 alpha-amylase 2 with acarbose and cyclodextrins
demonstrate the multiple substrate recognition
mechanism 		279 2004 15138257
1VFO Ohtaki, A., Mizuno, M., Tonozuka, T., Sakano,
Y., Kamitori, S. 		31033 J.BIOL.CHEM. Complex structures of Thermoactinomyces vulgaris
R-47 alpha-amylase 2 with acarbose and cyclodextrins
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1VFU Ohtaki, A., Mizuno, M., Tonozuka, T., Sakano,
Y., Kamitori, S. 		31033 J.BIOL.CHEM. Complex structures of Thermoactinomyces vulgaris
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1VIW Nahoum, V., Farisei, F., Le-Berre-Anton,
V., Egloff, M.P., Rouge, P., Poerio, E.,
Payan, F. 		360 Acta Crystallogr., Sect.D A plant-seed inhibitor of two classes of
alpha-amylases: X-ray analysis of Tenebrio
molitor larvae alpha-amylase in complex
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1VJS Hwang, K.Y., Song, H.K., Chang, C., Lee,
J., Lee, S.Y., Kim, K.K., Choe, S., Sweet,
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from Bacillus licheniformis refined at 1.7
A resolution 		7 1997 9163741
1W9X Davies, G., Brzozowski, A.M., Dauter, Z.,
Rasmussen, M.D., Borchert, T.V., Wilson,
K.S. 		190 Acta Crystallogr.,Sect.D Structure of a Bacillus Halmapalus Family
13 Alpha-Amylase, Bha, in Complex with an
Acarbose-Derived Nonasaccharide at 2.1 A
Resolution 		61 2005 n/a
1WO2 Qian, M., Ajandouz, E.H., Payan, F., Nahoum,
V. 		3194 Biochemistry Molecular Basis of the Effects of Chloride
Ion on the Acid-Base Catalyst in the Mechanism
of Pancreatic alpha-Amylase 		44 2005 15736930
1WP6 Kanai, R., Haga, K., Akiba, T., Yamane, K.,
Harata, K. 		14047 Biochemistry Biochemical and crystallographic analyses
of maltohexaose-producing amylase from alkalophilic
Bacillus sp. 707 		43 2004 15518553
1WPC Kanai, R., Haga, K., Akiba, T., Yamane, K.,
Harata, K. 		14047 Biochemistry Biochemical and crystallographic analyses
of maltohexaose-producing amylase from alkalophilic
Bacillus sp. 707 		43 2004 15518553
1WZK Mizuno, M., Ichikawa, K., Tonozuka, T., Ohtaki,
A., Shimura, Y., Kamitori, S., Nishikawa,
A., Sakano, Y. 		n/a To be Published Mutagenesis and Structural Analysis of Thermoactinomyces
vulgaris R-47 alpha-Amylase II (TVA II) 		n/a n/a n/a
1WZL Mizuno, M., Ichikawa, K., Tonozuka, T., Ohtaki,
A., Shimura, Y., Kamitori, S., Nishikawa,
A., Sakano, Y. 		n/a To be Published Mutagenesis and Structural Analysis of Thermoactinomyces
vulgaris R-47 alpha-Amylase II (TVA II) 		n/a n/a n/a
1WZM Mizuno, M., Ichikawa, K., Tonozuka, T., Ohtaki,
A., Shimura, Y., Kamitori, S., Nishikawa,
A., Sakano, Y. 		n/a To be Published Mutagenesis and Structural Analysis of Thermoactinomyces
vulgaris R-47 alpha-Amylase II (TVA II) 		n/a n/a n/a
1XCW Li, C., Begum, A., Numao, S., Park, K.H.,
Withers, S.G., Brayer, G.D. 		3347 Biochemistry Acarbose Rearrangement Mechanism Implied
by the Kinetic and Structural Analysis of
Human Pancreatic alpha-Amylase in Complex
with Analogues and Their Elongated Counterparts 		44 2005 15736945
1XCX Li, C., Begum, A., Numao, S., Park, K.H.,
Withers, S.G., Brayer, G.D. 		3347 Biochemistry Acarbose Rearrangement Mechanism Implied
by the Kinetic and Structural Analysis of
Human Pancreatic alpha-Amylase in Complex
with Analogues and Their Elongated Counterparts 		44 2005 15736945
1XD0 Li, C., Begum, A., Numao, S., Park, K.H.,
Withers, S.G., Brayer, G.D. 		3347 Biochemistry Acarbose Rearrangement Mechanism Implied
by the Kinetic and Structural Analysis of
Human Pancreatic alpha-Amylase in Complex
with Analogues and Their Elongated Counterparts 		44 2005 15736945
1XD1 Li, C., Begum, A., Numao, S., Park, K.H.,
Withers, S.G., Brayer, G.D. 		3347 Biochemistry Acarbose Rearrangement Mechanism Implied
by the Kinetic and Structural Analysis of
Human Pancreatic alpha-Amylase in Complex
with Analogues and Their Elongated Counterparts 		44 2005 15736945
1XGZ Maurus, R., Begum, A., Kuo, H.H., Racaza,
A., Numao, S., Andersen, C., Tams, J.W.,
Vind, J., Overall, C.M., Withers, S.G.,
Brayer, G.D. 		743 PROTEIN SCI. Structural and mechanistic studies of chloride
induced activation of human pancreatic alpha-amylase 		14 2005 15722449
1XH0 Maurus, R., Begum, A., Kuo, H.H., Racaza,
A., Numao, S., Andersen, C., Tams, J.W.,
Vind, J., Overall, C.M., Withers, S.G.,
Brayer, G.D. 		743 PROTEIN SCI. Structural and mechanistic studies of chloride
induced activation of human pancreatic alpha-amylase 		14 2005 15722449
1XH1 Maurus, R., Begum, A., Kuo, H.H., Racaza,
A., Numao, S., Andersen, C., Tams, J.W.,
Vind, J., Overall, C.M., Withers, S.G.,
Brayer, G.D. 		743 PROTEIN SCI. Structural and mechanistic studies of chloride
induced activation of human pancreatic alpha-amylase 		14 2005 15722449
1XH2 Maurus, R., Begum, A., Kuo, H.H., Racaza,
A., Numao, S., Andersen, C., Tams, J.W.,
Vind, J., Overall, C.M., Withers, S.G.,
Brayer, G.D. 		743 PROTEIN SCI. Structural and mechanistic studies of chloride
induced activation of human pancreatic alpha-amylase 		14 2005 15722449
1XV8 Fisher, S.Z., Govindasamy, L., Tu, C.K.,
Silverman, D.N., Rajaniemi, H., McKenna,
R. 		n/a To be Published Crystal Structure of Human Salivary Alpha-Amylase
Dimer 		n/a n/a n/a
1Z32 Ramasubbu, N., Ragunath, C., Sundar, K.,
Mishra, P.J., Gyemant, G., Kandra, L. 		n/a To be Published Structure-function relationships in human
salivary alpha-amylase: Role of aromatic
residues 		n/a n/a n/a
2AAA Boel, E., Brady, L., Brzozowski, A.M., Derewenda,
Z., Dodson, G.G., Jensen, V.J., Petersen,
S.B., Swift, H., Thim, L., Woldike, H.F. 		6244 Biochemistry Calcium binding in alpha-amylases: an X-ray
diffraction study at 2.1-A resolution of
two enzymes from Aspergillus. 		29 1990 2207069
2AIT Kline, A.D., Braun, W., Wuthrich, K. 675 J.Mol.Biol. Determination of the complete three-dimensional
structure of the alpha-amylase inhibitor
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2BHU Timmins, J., Leiros, H.-K.S., Leonard, G.,
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Trehalohydrolase from Deinococcus Radiodurans
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2BHY Timmins, J., Leiros, H.-K.S., Leonard, G.,
Leiros, I., Mcsweeney, S. 		949 J.Mol.Biol. Crystal Structure of Maltooligosyltrehalose
Trehalohydrolase from Deinococcus Radiodurans
in Complex with Disaccharides 		347 2005 n/a
2BHZ Timmins, J., Leiros, H.-K.S., Leonard, G.,
Leiros, I., Mcsweeney, S. 		949 J.Mol.Biol. Crystal Structure of Maltooligosyltrehalose
Trehalohydrolase from Deinococcus Radiodurans
in Complex with Disaccharides 		347 2005 n/a
2C3G Boraston, A.B., Healey, M., Klassen, J.,
Ficko-Blean, E., Lammerts Van Bueren, A.,
Law, V. 		587 J.Biol.Chem. A Structural and Functional Analysis of Alpha-Glucan
Recognition by Family 25 and 26 Carbohydrate-Binding
Modules Reveals a Conserved Mode of Starch
Recognition 		281 2006 n/a
2C3H Boraston, A.B., Healey, M., Klassen, J.,
Ficko-Blean, E., Lammerts Van Bueren, A.,
Law, V. 		587 J.Biol.Chem. A Structural and Functional Analysis of Alpha-Glucan
Recognition by Family 25 and 26 Carbohydrate-Binding
Modules Reveals a Conserved Mode of Starch
Recognition 		281 2006 n/a
2C3V Boraston, A.B., Healey, M., Klassen, J.,
Ficko-Blean, E., Lammerts Van Bueren, A.,
Law, V. 		587 J.Biol.Chem. A Structural and Functional Analysis of Alpha-Glucan
Recognition by Family 25 and 26 Carbohydrate-Binding
Modules Reveals a Conserved Mode of Starch
Recognition 		281 2006 n/a
2C3W Boraston, A.B., Healey, M., Klassen, J.,
Ficko-Blean, E., Lammerts Van Bueren, A.,
Law, V. 		587 J.Biol.Chem. A Structural and Functional Analysis of Alpha-Glucan
Recognition by Family 25 and 26 Carbohydrate-Binding
Modules Reveals a Conserved Mode of Starch
Recognition 		281 2006 n/a
2C3X Boraston, A.B., Healey, M., Klassen, J.,
Ficko-Blean, E., Lammerts Van Bueren, A.,
Law, V. 		587 J.Biol.Chem. A Structural and Functional Analysis of Alpha-Glucan
Recognition by Family 25 and 26 Carbohydrate-Binding
Modules Reveals a Conserved Mode of Starch
Recognition 		281 2006 n/a
2CPU Brayer, G.D., Sidhu, G., Maurus, R., Rydberg,
E.H., Braun, C., Wang, Y., Nguyen, N.T.,
Overall, C.M., Withers, S.G. 		4778 Biochemistry Subsite mapping of the human pancreatic alpha-amylase
active site through structural, kinetic,
and mutagenesis techniques. 		39 2000 10769135
2TAA Matsuura, Y., Kusunoki, M., Harada, W., Kakudo,
M. 		697 J.Biochem.(Tokyo) Structure and possible catalytic residues
of Taka-amylase A 		95 1984 6609921
3AIT Billeter, M., Schaumann, T., Braun, W., Wuthrich,
K. 		695 Biopolymers Restrained Energy Refinement with Two Different
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